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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64546249_64547128_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64546249 - 64547128
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAAAG
5'SS Class:
major
3'SS Sequence:
TTTGTGCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TATCTTTGAACT
Flanking Amino Acid:
LVFGVADLKNGAVGLYNMGH
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.2
39
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80.3
0.68
0.9
73.2
37.3
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
64.5
0.53
1.4
79.33
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007508
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007808
64543110 - 64556726
13617