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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64549845_64550656_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64549845 - 64550656
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTATTTTTACTC
Flanking Amino Acid:
VKMQIKDQDLVTKLSDLYTI
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82
0.72
0.8
73.9
36.6
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
54.2
0.11
1.6
61.67
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007508
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007808
64543110 - 64556726
13617