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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64553053_64554365_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64553053 - 64554365
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGGTTTTAAAT
Flanking Amino Acid:
YCEKKTPFLQSMKLVHLPQT
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.3
0.75
0.9
76.6
37.2
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
62.2
0.46
1.5
76.07
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007508
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007808
64543110 - 64556726
13617