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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64555588_64556044_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64555588 - 64556044
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GAGTTTTTACCA
Flanking Amino Acid:
YCFNDSTVDQVSWDDVKCTY
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
53.8
0.12
1.6
60.3
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007508
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007808
64543110 - 64556726
13617