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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64614155_64614624_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64614155 - 64614624
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGATTTTCAGCT
Flanking Amino Acid:
TPKRIVENFKVFDFELTKEE
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
79.7
0.67
0.9
81.3
30.7
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
49.9
0.07
1.7
69.55
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033842
64613217 - 64619122
5906