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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64614709_64614888_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64614709 - 64614888
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TTCTCCCTGACT
Flanking Amino Acid:
AAKHNKTPAQVLLRFQVQRN
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
71.7
0.76
1.7
88.31
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028255
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033842
64613217 - 64619122
5906
ENSAPLT00000026346
64602010 - 64619122
17113