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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64891191_64897457_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64891191 - 64897457
Intron Length:
6267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGTG
5'SS Class:
major
3'SS Sequence:
ATCTCCTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
ATCTCCTGAGCA
Flanking Amino Acid:
PKEVPIEENQVKDDKDKEKA
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
69.5
41.5
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
66.7
0.38
1
62.8
37.7
Minor 5ss
34.3
-1.8
3.6
48.2
47.9
Minor BPS
60.3
0.32
1.7
70.95
41

Associated Gene:

Gene:
CALD1
Ensembl Gene ID:
ENSAPLG00000015139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028994
64865122 - 64919163
54042
ENSAPLT00000027581
64826678 - 64919163
92486
ENSAPLT00000015797
64865122 - 64916240
51119
ENSAPLT00000047503
64826678 - 64914960
88283