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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64897607_64902378_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64897607 - 64902378
Intron Length:
4772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GGTGCATTAACT
Flanking Amino Acid:
PKLKSTENAFGRSNLKGTAN
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
35
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.5
0.78
0.8
77.2
36.4
Minor 5ss
41
-1
2.7
45.9
42.3
Minor BPS
64.3
0.53
1.8
79.13
42.3

Associated Gene:

Gene:
CALD1
Ensembl Gene ID:
ENSAPLG00000015139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047503
64826678 - 64914960
88283
ENSAPLT00000028994
64865122 - 64919163
54042
ENSAPLT00000027581
64826678 - 64919163
92486
ENSAPLT00000015797
64865122 - 64916240
51119