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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64902569_64904430_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64902569 - 64904430
Intron Length:
1862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTGGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATAACCTTTATT
Flanking Amino Acid:
EEIERKAREEEEKRRMKEEI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
65.4
0.35
1.1
66.4
44.5
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
61.7
0.45
1.7
76.15
40.4

Associated Gene:

Gene:
CALD1
Ensembl Gene ID:
ENSAPLG00000015139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027581
64826678 - 64919163
92486
ENSAPLT00000015797
64865122 - 64916240
51119
ENSAPLT00000047503
64826678 - 64914960
88283
ENSAPLT00000028994
64865122 - 64919163
54042