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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64904572_64911315_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64904572 - 64911315
Intron Length:
6744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTCC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTACTTTTAACC
Flanking Amino Acid:
CFSPKGSSLKIEERAEFLNK
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
66.7
40.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.5
0.78
0.7
77.4
31.3
Minor 5ss
52.4
0.08
2.4
69.1
41.7
Minor BPS
72.4
0.68
1.1
76.26
33.3

Associated Gene:

Gene:
CALD1
Ensembl Gene ID:
ENSAPLG00000015139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015797
64865122 - 64916240
51119
ENSAPLT00000047503
64826678 - 64914960
88283
ENSAPLT00000028994
64865122 - 64919163
54042
ENSAPLT00000027581
64826678 - 64919163
92486