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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64911360_64911470_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64911360 - 64911470
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTACTCCTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TTCTTTTCTACT
Flanking Amino Acid:
AEFLNKSAQKSGMKPTHTTA
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
68.2
0.41
1
67.5
32.8
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
52.9
0.17
1.9
75.31
41.7

Associated Gene:

Gene:
CALD1
Ensembl Gene ID:
ENSAPLG00000015139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027581
64826678 - 64919163
92486
ENSAPLT00000015797
64865122 - 64916240
51119
ENSAPLT00000047503
64826678 - 64914960
88283
ENSAPLT00000028994
64865122 - 64919163
54042