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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64911550_64912984_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64911550 - 64912984
Intron Length:
1435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTGGTCTCAATT
Flanking Amino Acid:
RLEQYTSAVVGTKAAKPAKP
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.4
0.68
0.8
74.3
35.5
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
52.4
0.15
1.7
66.93
44.7

Associated Gene:

Gene:
CALD1
Ensembl Gene ID:
ENSAPLG00000015139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028994
64865122 - 64919163
54042
ENSAPLT00000027581
64826678 - 64919163
92486
ENSAPLT00000015797
64865122 - 64916240
51119
ENSAPLT00000047503
64826678 - 64914960
88283