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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64913126_64914110_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64913126 - 64914110
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTCTGAAAGT
Flanking Amino Acid:
PSGGTGAPNKETAGLKGGVS
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.3
0.79
0.7
81.3
30.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
46.3
-0.2
2.5
72.26
45

Associated Gene:

Gene:
CALD1
Ensembl Gene ID:
ENSAPLG00000015139
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028994
64865122 - 64919163
54042
ENSAPLT00000027581
64826678 - 64919163
92486
ENSAPLT00000015797
64865122 - 64916240
51119
ENSAPLT00000047503
64826678 - 64914960
88283