Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64916318_64916644_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64916318 - 64916644

Intron Length:

327

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACACAT

5'SS Class:

major

3'SS Sequence:

CTTTTTAAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCAACTTTAATA

Flanking Amino Acid:

VDKPAASSSKVTAAGKKSET

Intron Amino Acid Position:

495

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

71.6

40.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.1

0.54

37.6

Minor 5ss

39.2

-1.2

3.2

56.5

47.6

Minor BPS

67.2

0.54

1.3

68.58

38.2

Associated Gene:

Gene:

CALD1

Ensembl Gene ID:

ENSAPLG00000015139

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028994

64865122 - 64919163

54042

ENSAPLT00000027581

64826678 - 64919163

92486