Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64916679_64918370_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64916679 - 64918370

Intron Length:

1692

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTCAGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CCATCTTTAATT

Flanking Amino Acid:

TAAGKKSETNGLRQFEKEP*

Intron Amino Acid Position:

506

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

88.8

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

81.5

0.71

0.8

78.5

28.7

Minor 5ss

37.5

-1.4

2.8

48.3

41.8

Minor BPS

71.6

0.76

1.2

75.99

41.5

Associated Gene:

Gene:

CALD1

Ensembl Gene ID:

ENSAPLG00000015139

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028994

64865122 - 64919163

54042

ENSAPLT00000027581

64826678 - 64919163

92486