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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64922255_64922581_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
64922255 - 64922581
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
ACACCTGTAAAA
Flanking Amino Acid:
NRNWRAVPVAQAVNHKDYPF
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
69
36.7
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
60.7
0.36
2.2
75.3
34.1
Minor BPS
45.3
-0.3
2
53.17
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014410
64922212 - 64930138
7927