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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64922665_64923499_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64922665 - 64923499
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTTT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAAAAAAGAAAC
Flanking Amino Acid:
KVQRIKENIKVFDFELSKKE
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
78
32.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
78
0.63
0.9
73.8
36.9
Minor 5ss
36.6
-1.5
3.6
55
49.2
Minor BPS
36
-1
1.8
43.96
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014410
64922212 - 64930138
7927