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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64924726_64924903_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64924726 - 64924903
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
YSPLGSPNRPWAKPGEPLLL
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
77.1
0.61
0.9
78.3
34.9
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014410
64922212 - 64930138
7927