About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64927419_64928137_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
64927419 - 64928137

Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAGTTCTT

5'SS Class:
major

3'SS Sequence:
CTTGAAATAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAG

U12 Branch Point Sequence:
TCTGCCTTGAAA

Flanking Amino Acid:
YLIHFPTGFKAGEDLMPTDD

Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77
0.64
1.1
74.6
41.7

Major BPS
75.6
0.64
1.5
84
34.5

Major PPT
63
0.29
1.1
55.9
42.3

Minor 5ss
38.8
-1.3
3.4
58.7
45.8

Minor BPS
64
0.44
1.6
71.32
41

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

64922212 - 64930138
7927