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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_64928255_64929293_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64928255 - 64929293
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGGAA
U12 Branch Point Sequence:
GTTTCTTCCACA
Flanking Amino Acid:
RREDLFIVTKLWNTFHEKSL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
48.3
-0.1
1.3
47.1
37.9
Major PPT
81.7
0.71
0.8
76.4
32.3
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
55.9
0.18
2
72.25
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014410
64922212 - 64930138
7927