About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65057734_65058456_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65057734 - 65058456
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGGG
5'SS Class:
major
3'SS Sequence:
CTTTTCAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCAAAACA
Flanking Amino Acid:
SMEILDTAGQEDAIQKEGHV
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.3
43.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.4
0.48
1
67.4
36.9
Minor 5ss
25.6
-2.8
3.1
31.6
42.7
Minor BPS
54.6
0.14
2
71.45
40.9

Associated Gene:

Gene:
RERG
Ensembl Gene ID:
ENSAPLG00000013727
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014299
65057326 - 65167929
110604