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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65355251_65356592_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
65355251 - 65356592
Intron Length:
1342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTCTCTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.9
31.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
43.8
-0.7
2.5
54.1
37.3
Minor BPS
82.6
1.1
1
93.07
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013574
65346597 - 65366028
19432