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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65357775_65358290_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65357775 - 65358290
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
CKNRYTNILPYDFSRVRLVS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013574
65346597 - 65366028
19432