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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65360489_65361490_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65360489 - 65361490
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTATTTACAT
Flanking Amino Acid:
MLTQCNEKRRVKCDHYWPFT
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.9
0.76
0.9
81.3
35.7
Minor 5ss
43
-0.8
2.6
51.2
45.5
Minor BPS
48.9
-0
1.9
68.34
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013574
65346597 - 65366028
19432