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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65394428_65395259_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65394428 - 65395259
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CAAATTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTACCAAATT
Flanking Amino Acid:
LSVMKEEIVEILDDRKQWWK
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
70.9
0.47
1
66.6
43.3
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
48.8
-0
2.1
74.6
42

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090
ENSAPLT00000012563
65377447 - 65508536
131090