About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65395372_65399189_R


Intron Information:

Intron Rank:
15

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
65395372 - 65399189

Intron Length:
3818

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTAACACTG

5'SS Class:
major

3'SS Sequence:
CTTTACATTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTACAT

U12 Branch Point Sequence:
TCTCACTGAACA

Flanking Amino Acid:
FKQTVSRHVDRNYEAHNKTQ

Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.2
0.62
1.2
66.4
45.1

Major BPS
82.7
0.81
0.9
89.3
26.1

Major PPT
80.7
0.69
0.9
74.2
34.8

Minor 5ss
41.1
-1
3.2
56.5
47.6

Minor BPS
59.8
0.31
1.7
71.21
40.3

Associated Gene:

Gene:
EPS8

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

65377447 - 65508536
131090

65377447 - 65508536
131090