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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65399324_65403458_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65399324 - 65403458
Intron Length:
4135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCTTCTTTGTCT
Flanking Amino Acid:
KQEIKRLSTEPPGVPDYPPS
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.2
30.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
87.2
0.84
0.7
84.6
30.3
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
48.8
-0
3.5
82.48
39.6

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090
ENSAPLT00000012563
65377447 - 65508536
131090