About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65406068_65406658_R


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
65406068 - 65406658

Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTAAGCTTT

5'SS Class:
strong_major

3'SS Sequence:
TACTTGTATTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TTTATTTTAATA

Flanking Amino Acid:
VHFLFTPLHMVVQTTGGPEL

Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84.6
0.81
0.9
80.5
34.9

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
71.8
0.49
1
70.2
40.2

Minor 5ss
49.9
-0
2.8
70.4
41.2

Minor BPS
73.5
0.73
1.1
79.23
30.7

Associated Gene:

Gene:
EPS8

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

65377447 - 65508536
131090

65377447 - 65508536
131090