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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65406734_65410532_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65406734 - 65410532
Intron Length:
3799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTCTTACAA
Flanking Amino Acid:
QKFKHGFNLLAKLKFHIQNP
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.2
0.64
0.7
76.3
25.9
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
61.6
0.36
1.7
72.99
38.7

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090
ENSAPLT00000012563
65377447 - 65508536
131090