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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65410622_65410984_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65410622 - 65410984
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTGTTCAACA
Flanking Amino Acid:
TKKSKKKGPGEGVLTLRSKP
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
75.3
0.57
1
70.5
39.5
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
58.3
0.26
2
73.85
38.1

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012563
65377447 - 65508536
131090
ENSAPLT00000019116
65377447 - 65508536
131090