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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65411112_65412183_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65411112 - 65412183
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GTAACTGTAATT
Flanking Amino Acid:
MIAARIDRDVQILNHILDDI
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.1
32.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
36.9
-1.5
3.4
55
43.6
Minor BPS
50.4
0.09
2
70.12
41.1

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090
ENSAPLT00000012563
65377447 - 65508536
131090