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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65414743_65416995_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65414743 - 65416995
Intron Length:
2253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCTAGCTGAATA
Flanking Amino Acid:
LHLFQCDEIKASFIHEDIES
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.8
0.76
0.8
81.1
30.9
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
50.7
0.02
1.9
64.75
41.9

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090
ENSAPLT00000012563
65377447 - 65508536
131090