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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65427948_65429033_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65427948 - 65429033
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TTAACCAGAAAT
Flanking Amino Acid:
GGYGSYSPQINGYGSPTFGQ
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
78.5
31.6
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
42
-0.9
3.3
55.6
43.2
Minor BPS
49.8
0.06
1.9
73.82
41.7

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090
ENSAPLT00000012563
65377447 - 65508536
131090