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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65429125_65470460_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
65429125 - 65470460
Intron Length:
41336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GAGACTTCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
91
0.92
0.6
87.8
22.1
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
50.7
0.1
1.6
63
41.3

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090