About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65470520_65508234_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
65470520 - 65508234
Intron Length:
37715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTGAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
62.7
0.26
1.5
68.71
38.9

Associated Gene:

Gene:
EPS8
Ensembl Gene ID:
ENSAPLG00000012030
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019116
65377447 - 65508536
131090