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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65510405_65510776_F

Intron Information:

Intron Rank:
144887
Intron Class:
major
Intron Phase:
Intron Coordinates:
65510405 - 65510776
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTATCTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74.4
0.55
0.9
70.1
35.3
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
64.5
0.45
1.3
70.1
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028115
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028397
65508937 - 65510912
1976