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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65543108_65544119_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65543108 - 65544119
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCGAG
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTACCTGAATA
Flanking Amino Acid:
YGYFLISACKDGKPMLRQGD
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
59.3
41.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.8
0.51
1.1
75.2
38.8
Minor 5ss
29.8
-2.3
3.2
29
43.5
Minor BPS
66.9
0.53
1.5
74.32
36.8

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030344
65542021 - 65576862
34842
ENSAPLT00000029991
65542021 - 65579146
37126
ENSAPLT00000011484
65542021 - 65551072
9052
ENSAPLT00000011400
65542021 - 65604921
62901
ENSAPLT00000035246
65542021 - 65607466
65446