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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65545103_65545364_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65545103 - 65545364
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CACTTTATAACT
Flanking Amino Acid:
HIVKSVDFTQDSNYLLTGGQ
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
81.2
0.7
0.8
78.1
34.3
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
55.3
0.24
1.6
69.02
42.2

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011400
65542021 - 65604921
62901
ENSAPLT00000035246
65542021 - 65607466
65446
ENSAPLT00000030344
65542021 - 65576862
34842
ENSAPLT00000029991
65542021 - 65579146
37126
ENSAPLT00000011484
65542021 - 65551072
9052