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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65549565_65550108_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65549565 - 65550108
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AAGGTATTAACT
Flanking Amino Acid:
TYGLWKCVVPEEENAEAAKA
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
38.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.5
0.8
0.7
80.5
24.8
Minor 5ss
33.1
-1.9
3.1
38.5
40.7
Minor BPS
54
0.21
1.7
68.3
42.4

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011484
65542021 - 65551072
9052
ENSAPLT00000011400
65542021 - 65604921
62901
ENSAPLT00000035246
65542021 - 65607466
65446
ENSAPLT00000030344
65542021 - 65576862
34842
ENSAPLT00000029991
65542021 - 65579146
37126