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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65550175_65550510_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65550175 - 65550510
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
CTTTGTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AATTAAATAATA
Flanking Amino Acid:
SLPGTAEEEIAEEVASENSD
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
65.9
39.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
80.2
0.68
0.8
75.8
32.8
Minor 5ss
31.1
-2.2
3.3
41.5
45.2
Minor BPS
47.4
-0.2
2
62.83
36.4

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011484
65542021 - 65551072
9052