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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65562529_65565572_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65562529 - 65565572
Intron Length:
3044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CCTTCCTTCACT
Flanking Amino Acid:
KWRTVKGNWQAAWLLKAVTC
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
82.8
0.74
0.8
76.8
31
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
71.6
0.76
1.8
83.33
44.1

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035246
65542021 - 65607466
65446
ENSAPLT00000030344
65542021 - 65576862
34842
ENSAPLT00000029991
65542021 - 65579146
37126
ENSAPLT00000011400
65542021 - 65604921
62901