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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65565721_65567200_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65565721 - 65567200
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
AAGAAGTGAACT
Flanking Amino Acid:
LLKAMDMHDKGITVAAVCVY
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
35.1
Major BPS
66.7
0.41
1
57.8
39
Major PPT
79.7
0.67
0.9
73.4
37
Minor 5ss
43.1
-0.8
3
56.5
47.9
Minor BPS
42.6
-0.4
2.2
58.72
43.5

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035246
65542021 - 65607466
65446
ENSAPLT00000030344
65542021 - 65576862
34842
ENSAPLT00000029991
65542021 - 65579146
37126
ENSAPLT00000011400
65542021 - 65604921
62901