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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65575768_65579081_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65575768 - 65579081
Intron Length:
3314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CCATGTCTACTT
Flanking Amino Acid:
YKASMIAMMAEQYVGRRTSE
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
80.6
0.69
0.7
73.4
31.6
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
39.8
-0.6
2.1
52.17
43.6

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029991
65542021 - 65579146
37126