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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65602527_65604231_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65602527 - 65604231
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CCATCATGAATT
Flanking Amino Acid:
SSLLEDIEKQIFHHVTGSYA
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
68.3
42.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
30.9
-2.2
2.6
36.9
40.1
Minor BPS
51.8
0.14
1.8
66.83
43.8

Associated Gene:

Gene:
STRAP
Ensembl Gene ID:
ENSAPLG00000011004
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011400
65542021 - 65604921
62901