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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65659228_65661175_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65659228 - 65661175
Intron Length:
1948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGCAT
U12 Branch Point Sequence:
CCTTCCATATCC
Flanking Amino Acid:
NTLGFWTIAHRYNNLNQEYT
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
63.3
0.33
1.5
74
41.2
Major PPT
77.9
0.63
0.7
71.8
26.4
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
54.4
0.12
2
66.95
44.6

Associated Gene:

Gene:
SLC15A5
Ensembl Gene ID:
ENSAPLG00000010794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042199
65659083 - 65724115
65033
ENSAPLT00000027759
65659083 - 65690627
31545
ENSAPLT00000023595
65659083 - 65706137
47055
ENSAPLT00000011235
65659083 - 65690627
31545