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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65661285_65668170_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65661285 - 65668170
Intron Length:
6886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTATTTCAAAT
Flanking Amino Acid:
FVQTAHTGTQGNWFPHLLHE
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.8
0.56
1
68.7
42
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
51.1
0.11
1.7
69.6
41.4

Associated Gene:

Gene:
SLC15A5
Ensembl Gene ID:
ENSAPLG00000010794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042199
65659083 - 65724115
65033
ENSAPLT00000027759
65659083 - 65690627
31545
ENSAPLT00000023595
65659083 - 65706137
47055
ENSAPLT00000011235
65659083 - 65690627
31545
ENSAPLT00000046500
65644317 - 65706137
61821