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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65662771_65668170_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65662771 - 65668170
Intron Length:
5400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ACTGCATGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TTTGAGATAATG
Flanking Amino Acid:
FVQTAHTGTQGEVVLRCDRQ
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
60.3
0.26
1
65.5
28
Major PPT
61.2
0.25
1
54.4
39.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
42.8
-0.6
2.4
56.94
44.7

Associated Gene:

Gene:
SLC15A5
Ensembl Gene ID:
ENSAPLG00000010794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034337
65662647 - 65690627
27981