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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65672678_65676729_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65672678 - 65676729
Intron Length:
4052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTAG
5'SS Class:
major
3'SS Sequence:
GCTCTTTACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGCTCTTTACCC
Flanking Amino Acid:
ESGCSPTIYIVVGQLSAALS
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.3
37.6
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
72.7
0.51
0.9
65.2
40.3
Minor 5ss
45.8
-0.4
2.5
54.1
44.6
Minor BPS
64
0.42
1.6
70.5
41.3

Associated Gene:

Gene:
SLC15A5
Ensembl Gene ID:
ENSAPLG00000010794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034337
65662647 - 65690627
27981
ENSAPLT00000027759
65659083 - 65690627
31545
ENSAPLT00000023595
65659083 - 65706137
47055
ENSAPLT00000046500
65644317 - 65706137
61821
ENSAPLT00000011235
65659083 - 65690627
31545
ENSAPLT00000042199
65659083 - 65724115
65033