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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65676917_65679399_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65676917 - 65679399
Intron Length:
2483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCACAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATTCCACAATA
Flanking Amino Acid:
QILYRTCIMQIPSGYYLQTM
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69.4
0.44
1
62.4
37.3
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
60
0.31
1.8
74.32
36.9

Associated Gene:

Gene:
SLC15A5
Ensembl Gene ID:
ENSAPLG00000010794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027759
65659083 - 65690627
31545
ENSAPLT00000023595
65659083 - 65706137
47055
ENSAPLT00000046500
65644317 - 65706137
61821
ENSAPLT00000011235
65659083 - 65690627
31545
ENSAPLT00000042199
65659083 - 65724115
65033
ENSAPLT00000034337
65662647 - 65690627
27981