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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_65689169_65724004_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
65689169 - 65724004
Intron Length:
34836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AGAGCCTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
77.1
0.61
0.9
70.8
38.7
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
70.6
0.64
1.4
71.78
39.8

Associated Gene:

Gene:
SLC15A5
Ensembl Gene ID:
ENSAPLG00000010794
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042199
65659083 - 65724115
65033